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  3. M-83 SNPs

M-83 SNPs

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Total record count: 7933.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3172 16641 C T 12 116.77 CDS Transition 0/1 Unannotated
Scaffold_3177 43325 C T 54 1490.77 noncoding Transition 1/1 Unannotated
Scaffold_3177 43339 C T 52 1203.77 noncoding Transition 0/1 Unannotated
Scaffold_3177 43387 C T 13 259.77 noncoding Transition 0/1 Unannotated
Scaffold_3177 63658 C T 17 49.77 intron Transition 0/1 Unannotated
Scaffold_3177 63998 T C 11 35.77 intron Transition 0/1 Uncharacterized mitochondrial protein AtMg01060 (ORF107g)
Scaffold_3177 64015 C T 12 61.77 CDS Transition 0/1 Uncharacterized mitochondrial protein AtMg01060 (ORF107g)
Scaffold_3179 54120 C T 249 5458.77 noncoding Transition 1/1 Cytochrome b559 subunit alpha (PSII reaction center subunit V)
Scaffold_3179 54186 C T 34 777.77 noncoding Transition 0/1 Unannotated
Scaffold_3180 32901 C T 250 1464.77 noncoding Transition 0/1 Unannotated
Scaffold_3180 33482 G A 246 8571.77 noncoding Transition 1/1 Unannotated
Scaffold_3183 16454 G A 56 187.77 exon Transition 0/1 Unannotated
Scaffold_3183 16877 G A 37 56.77 CDS Transition 0/1 Unannotated
Scaffold_3183 16973 G A 35 64.77 intron Transition 0/1 Unannotated
Scaffold_3183 17055 T C 40 32.77 intron Transition 0/1 Unannotated
Scaffold_3183 17151 G A 89 75.77 CDS Transition 0/1 Unannotated
Scaffold_3185 748 G A 15 251.8 exon Transition 1/1 Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more
Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
Scaffold_3185 756 G A 15 245.8 exon Transition 1/1 Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more
Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
Scaffold_3192 6 A G 247 135.77 noncoding Transition 0/1 Unannotated
Scaffold_3192 10 A G 250 56.77 noncoding Transition 0/1 Unannotated

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