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M-83 SNPs

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Total record count: 7933.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3612 72781 C T 137 4038.77 exon Transition 1/1 Unannotated
Scaffold_3612 72837 C T 17 287.77 exon Transition 0/1 Unannotated
Scaffold_3613 43961 G A 15 30.77 exon Transition 0/1 Unannotated
Scaffold_3617 2352 G A 15 30.77 noncoding Transition 0/1 Unannotated
Scaffold_3617 3518 G A 19 57.77 CDS Transition 0/1 Unannotated
Scaffold_3618 55982 C T 19 578.28 noncoding Transition 1/1 30S ribosomal protein S12-B, chloroplastic
Scaffold_3619 39899 C T 14 52.77 intron Transition 0/1 Unannotated
Scaffold_3619 42567 C T 15 206.77 CDS Transition 0/1 Unannotated
Scaffold_3619 44387 C T 34 66.77 noncoding Transition 0/1 Unannotated
Scaffold_3620 14709 C T 250 2858.77 noncoding Transition 0/1 NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (EC 7.1.1.-) (NAD... more
NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase, subunit 2 B) (NADH-plastoquinone oxidoreductase subunit 2 B)
Scaffold_3621 53331 A G 24 34.77 noncoding Transition 0/1 Unannotated
Scaffold_3622 5196 C T 14 30.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3622 5266 C T 23 144.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3622 5267 C T 23 133.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3622 5268 G A 22 131.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3622 5299 A G 16 117.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3626 59480 C T 15 195.77 exon Transition 0/1 Unannotated
Scaffold_3626 59495 G A 15 109.77 exon Transition 0/1 Unannotated
Scaffold_3632 9 T C 250 410.77 intron Transition 0/1 Unannotated
Scaffold_3632 128 G A 142 338.77 intron Transition 0/1 Unannotated

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