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  3. RGC-1066 SNPs

RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_343 65589 G A 10 112.77 CDS Transition 0/1 3-dehydroquinate synthase, chloroplastic (EC 4.2.3.4)
Scaffold_669 45817 A G 35 439.77 CDS Transition 0/1 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (HMG-CoA reductase 1) (EC... more
3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (HMG-CoA reductase 1) (EC 1.1.1.34)
Scaffold_669 45824 T C 35 446.77 CDS Transition 0/1 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (HMG-CoA reductase 1) (EC... more
3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (HMG-CoA reductase 1) (EC 1.1.1.34)
Scaffold_147 538861 A G 57 1415.77 CDS Transition 0/1 3-ketoacyl-CoA synthase 11 (KCS-11) (EC 2.3.1.199) (Very long-chain fatty a... more
3-ketoacyl-CoA synthase 11 (KCS-11) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 11) (VLCFA condensing enzyme 11)
Scaffold_3222 81746 C T 250 6009.77 CDS Transition 0/1 40S ribosomal protein S10, mitochondrial
Scaffold_5 395466 T C 175 1747.77 CDS Transition 0/1 40S ribosomal protein S10-3
Scaffold_5 395469 C T 177 1780.77 CDS Transition 0/1 40S ribosomal protein S10-3
Scaffold_2438 126493 T C 23 31.77 CDS Transition 0/1 40S ribosomal protein S12
Scaffold_1698 40329 A G 10 338.77 exon Transition 1/1 40S ribosomal protein S4
Scaffold_175 222693 A G 53 168.77 CDS Transition 0/1 40S ribosomal protein S5 (Fragment)
Scaffold_175 222717 T C 43 82.77 CDS Transition 0/1 40S ribosomal protein S5 (Fragment)
Scaffold_175 222723 G A 42 274.77 CDS Transition 0/1 40S ribosomal protein S5 (Fragment)
Scaffold_175 222729 T C 41 784.77 CDS Transition 0/1 40S ribosomal protein S5 (Fragment)
Scaffold_3639 22831 T C 229 8934.77 noncoding Transition 1/1 50S ribosomal protein L2, chloroplastic
Scaffold_3641 43067 C T 35 1198.77 noncoding Transition 1/1 50S ribosomal protein L2, chloroplastic (Chloroplastic large ribosomal subu... more
50S ribosomal protein L2, chloroplastic (Chloroplastic large ribosomal subunit protein uL2c) (Ribosomal protein CS-L4)
Scaffold_3763 81906 C T 151 173.9 noncoding Transition 1/1 50S ribosomal protein L23, chloroplastic
Scaffold_3763 81924 C T 166 92.28 noncoding Transition 1/1 50S ribosomal protein L23, chloroplastic
Scaffold_298 71018 G A 26 95.77 intron Transition 0/1 50S ribosomal protein L35, chloroplastic
Scaffold_2866 22116 A G 43 1391.77 noncoding Transition 1/1 50S ribosomal protein L36, chloroplastic
Scaffold_2866 22120 T C 45 1288.77 noncoding Transition 1/1 50S ribosomal protein L36, chloroplastic

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