2. INDEls on Clusterbean
  3. Rgc-936 Snps

Rgc-936 Snps

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Total record count: 9714.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_2971 36778 G C 57 235.77 intron Transversion 0/1 ATP-dependent zinc metalloprotease FTSH 2, chloroplastic (OsFTSH2) (EC 3.4.... more
ATP-dependent zinc metalloprotease FTSH 2, chloroplastic (OsFTSH2) (EC 3.4.24.-)
Scaffold_2971 36779 A C 35 321.77 intron Transversion 0/1 ATP-dependent zinc metalloprotease FTSH 2, chloroplastic (OsFTSH2) (EC 3.4.... more
ATP-dependent zinc metalloprotease FTSH 2, chloroplastic (OsFTSH2) (EC 3.4.24.-)
Scaffold_2974 43254 A C 15 128.77 exon Transversion 0/1 Dihydroceramide fatty acyl 2-hydroxylase FAH1 (EC 1.14.18.7) (Fatty acid 2-... more
Dihydroceramide fatty acyl 2-hydroxylase FAH1 (EC 1.14.18.7) (Fatty acid 2-hydroxylase 1) (AtFAH1)
Scaffold_2978 41668 G C 250 581.77 exon Transversion 0/1 Unannotated
Scaffold_2980 16040 C G 11 93.77 noncoding Transversion 0/1 Unannotated
Scaffold_2998 38241 T G 16 373.79 CDS Transversion 0/1 Unannotated
Scaffold_2998 38327 T G 27 172.77 CDS Transversion 0/1 Unannotated
Scaffold_3001 43595 A C 38 118.77 exon Transversion 0/1 Pentatricopeptide repeat-containing protein At1g62930, chloroplastic
Scaffold_3001 43748 G T 22 59.77 exon Transversion 0/1 Pentatricopeptide repeat-containing protein At1g62930, chloroplastic
Scaffold_3001 43815 T G 10 54.77 exon Transversion 0/1 Pentatricopeptide repeat-containing protein At1g62930, chloroplastic
Scaffold_3004 40935 C A 11 56.77 noncoding Transversion 0/1 Unannotated
Scaffold_3004 41009 G C 34 381.77 noncoding Transversion 0/1 Unannotated
Scaffold_3004 41065 G T 36 343.77 noncoding Transversion 0/1 Unannotated
Scaffold_3010 49641 G C 250 148.77 noncoding Transversion 0/1 Unannotated
Scaffold_3010 49900 T G 42 110.22 noncoding Transversion 0/1 Unannotated
Scaffold_3021 10713 G T 27 189.77 intron Transversion 0/1 Unannotated
Scaffold_3025 43857 A C 92 1606.77 exon Transversion 0/1 Unannotated
Scaffold_3025 44284 G C 13 122.77 noncoding Transversion 0/1 Unannotated
Scaffold_3026 13688 T A 29 569.77 exon Transversion 0/1 Unannotated
Scaffold_3027 52345 A T 159 2784.77 exon Transversion 0/1 Unannotated

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