2. INDEls on Clusterbean
  3. Rgc-936 Snps

Rgc-936 Snps

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Total record count: 9714.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_1271 44090 A G 72 288.77 CDS Transition 0/1 Probable fructokinase-7 (EC 2.7.1.4)
Scaffold_1271 44746 G A 24 478.77 CDS Transition 0/1 Probable fructokinase-7 (EC 2.7.1.4)
Scaffold_1273 6803 A G 31 509.77 CDS Transition 0/1 Unannotated
Scaffold_1274 8363 C T 110 2667.77 exon Transition 0/1 Protein phosphatase 1 regulatory subunit INH3 (Protein INHIBITOR-3) (AtINH3... more
Protein phosphatase 1 regulatory subunit INH3 (Protein INHIBITOR-3) (AtINH3)
Scaffold_1276 34985 T C 18 31.77 exon Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_1278 2820 C T 73 993.77 noncoding Transition 0/1 Unannotated
Scaffold_1285 8104 A G 128 42.77 exon Transition 0/1 Unannotated
Scaffold_1296 29914 C T 15 230.96 intron Transition 0/1 Unannotated
Scaffold_1296 29915 A C,T 28 855.77 intron Transition 1/2 Unannotated
Scaffold_1297 23739 A G 22 337.77 CDS Transition 0/1 Probable aquaporin PIP2-2 (OsPIP2;2) (Plasma membrane intrinsic protein 2-2... more
Probable aquaporin PIP2-2 (OsPIP2;2) (Plasma membrane intrinsic protein 2-2)
Scaffold_1299 35312 G A 90 66.77 noncoding Transition 0/1 Phosphoglucan phosphatase DSP4, chloroplastic (EC 3.1.3.-) (AtPTPKIS1) (Dua... more
Phosphoglucan phosphatase DSP4, chloroplastic (EC 3.1.3.-) (AtPTPKIS1) (Dual specificity protein phosphatase 4) (Protein STARCH-EXCESS 4) (AtSEX4)
Scaffold_1302 3771 C T 52 245.77 noncoding Transition 0/1 Unannotated
Scaffold_1303 35543 G A 15 189.77 exon Transition 0/1 Chromoplast-specific carotenoid-associated protein, chromoplastic
Scaffold_1306 48547 C T 14 131.77 exon Transition 0/1 Unannotated
Scaffold_1308 43546 A G 250 293.77 CDS Transition 0/1 Unannotated
Scaffold_1308 43967 A G 250 152.77 CDS Transition 0/1 Unannotated
Scaffold_1308 44089 C T 250 526.77 CDS Transition 0/1 Unannotated
Scaffold_1308 44197 T C 250 646.77 CDS Transition 0/1 Unannotated
Scaffold_1308 44205 T C 244 5262.77 CDS Transition 0/1 Unannotated
Scaffold_1308 44221 A G 241 4099.77 CDS Transition 0/1 Unannotated

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