Rgc-936 Snps

	SNP Id	Position	Reference Allele	Alternate Allele	DP	Quality	Located At	Type	Genotype	Function
	Scaffold_46	1107256	A	C	13	115.77	intron	Transversion	0/1	Unannotated
	Scaffold_46	1153009	A	T	11	306.56	noncoding	Transversion	0/1	Unannotated
	Scaffold_46	1258925	G	T	13	143.77	exon	Transversion	0/1	Unannotated
	Scaffold_46	1262632	T	A	25	557.56	CDS	Transversion	0/1	Unannotated
	Scaffold_46	1263030	A	C	26	220.77	CDS	Transversion	0/1	Unannotated
	Scaffold_46	1635757	C	A	239	539.77	exon	Transversion	0/1	Unannotated
	Scaffold_46	1897181	A	C	11	49.77	intron	Transversion	0/1	Unannotated
	Scaffold_47	191657	T	A	10	158.77	intron	Transversion	0/1	Unannotated
	Scaffold_47	212129	T	G	56	200.77	intron	Transversion	0/1	Unannotated
	Scaffold_47	244186	T	A	250	4273.77	intron	Transversion	0/1	Unannotated
	Scaffold_47	244189	A	T	250	3525.77	intron	Transversion	0/1	Unannotated
	Scaffold_47	248683	G	C	72	920.77	intron	Transversion	0/1	Unannotated
	Scaffold_47	250506	T	G	250	5130.77	CDS	Transversion	0/1	Unannotated
	Scaffold_47	303458	A	C	14	49.77	intron	Transversion	0/1	Unannotated
	Scaffold_47	367892	G	T	20	88.77	intron	Transversion	0/1	Unannotated
	Scaffold_47	413079	G	C	100	2079.77	intron	Transversion	0/1	Unannotated
	Scaffold_47	447936	A	T	18	32.77	CDS	Transversion	0/1	Unannotated
	Scaffold_47	447937	G	T	15	215.77	CDS	Transversion	0/1	Unannotated
	Scaffold_47	972904	C	A	76	127.77	CDS	Transversion	0/1	Probable carotenoid cleavage dioxygenase 4, chloroplastic (AtCCD4) (EC 1.14... more Probable carotenoid cleavage dioxygenase 4, chloroplastic (AtCCD4) (EC 1.14.99.-) (AtNCED4)
	Scaffold_47	1150684	T	G	178	439.77	CDS	Transversion	0/1	Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIV... more Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1)
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