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M-83 SNPs

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Total record count: 7933.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3602 41628 T G 25 361.77 intron Transversion 0/1 Unannotated
Scaffold_3603 15988 A C 250 4171.77 noncoding Transversion 0/1 Unannotated
Scaffold_3604 16226 T A 74 74.77 exon Transversion 0/1 Unannotated
Scaffold_3605 9309 A C 250 234.77 exon Transversion 0/1 Unannotated
Scaffold_3611 2567 T A 53 1734.77 intron Transversion 1/1 ATP synthase subunit alpha, chloroplastic (EC 7.1.2.2) (ATP synthase F1 sec... more
ATP synthase subunit alpha, chloroplastic (EC 7.1.2.2) (ATP synthase F1 sector subunit alpha) (F-ATPase subunit alpha)
Scaffold_3612 14521 C G 18 55.77 noncoding Transversion 0/1 Unannotated
Scaffold_3617 7789 C A 143 36.77 noncoding Transversion 0/1 Unannotated
Scaffold_3617 7795 T G 35 132.77 noncoding Transversion 0/1 Unannotated
Scaffold_3619 42111 G T 13 36.77 intron Transversion 0/1 Unannotated
Scaffold_3619 59689 G T 19 606.81 noncoding Transversion 1/1 Unannotated
Scaffold_3620 14754 T G 199 48.77 noncoding Transversion 0/1 NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (EC 7.1.1.-) (NAD... more
NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase, subunit 2 B) (NADH-plastoquinone oxidoreductase subunit 2 B)
Scaffold_3622 4531 T G 13 106.77 noncoding Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3622 4534 G C 13 30.77 noncoding Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3622 5225 C A 16 52.77 CDS Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3622 5300 C G 16 123.77 CDS Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3626 59491 A T 16 109.77 exon Transversion 0/1 Unannotated
Scaffold_3634 19170 A T 17 31.77 noncoding Transversion 0/1 Unannotated
Scaffold_3634 25091 G T 17 393.77 noncoding Transversion 0/1 Unannotated
Scaffold_3637 5995 G T 201 80.77 noncoding Transversion 0/1 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic (EC 7.1.1.-) (NAD(P... more
NAD(P)H-quinone oxidoreductase subunit H, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase subunit H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) (NADH-plastoquinone oxidoreductase subunit H)
Scaffold_3642 20073 A C 10 76.77 CDS Transversion 0/1 Protein Ycf2

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