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M-83 SNPs

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Total record count: 7933.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3533 16189 T C 250 1350.77 noncoding Transition 0/1 Unannotated
Scaffold_3533 16197 A G 250 579.77 noncoding Transition 0/1 Unannotated
Scaffold_3533 16201 T C 250 177.77 noncoding Transition 0/1 Unannotated
Scaffold_3536 24872 T C 18 274.77 CDS Transition 0/1 Unannotated
Scaffold_3536 34097 A G 42 416.77 exon Transition 0/1 Unannotated
Scaffold_3538 16464 T C 36 476.77 CDS Transition 0/1 Unannotated
Scaffold_3540 27165 T C 133 348.77 noncoding Transition 0/1 Photosystem II CP47 reaction center protein (PSII 47 kDa protein) (Protein ... more
Photosystem II CP47 reaction center protein (PSII 47 kDa protein) (Protein CP-47)
Scaffold_3544 24367 A G 57 218.77 noncoding Transition 0/1 Unannotated
Scaffold_3545 8501 G A 52 1158.77 noncoding Transition 0/1 Unannotated
Scaffold_3545 8540 T C 249 7703.77 noncoding Transition 1/1 Unannotated
Scaffold_3545 22190 A G 76 523.77 CDS Transition 0/1 Unannotated
Scaffold_3545 22510 A G 16 417.31 CDS Transition 0/1 Unannotated
Scaffold_3549 11938 T C 52 190.77 noncoding Transition 0/1 Unannotated
Scaffold_3556 5041 T C 17 222.77 noncoding Transition 0/1 Unannotated
Scaffold_3559 42357 G A 25 68.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3559 42372 C T 23 413.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3559 42415 A G 18 182.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3559 42605 C T 17 91.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3559 43165 C T 20 103.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3559 43465 C T 19 45.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]

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