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M-83 SNPs

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Total record count: 7933.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3559 43542 A G 31 78.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3559 43563 C T 31 84.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3562 1049 G A 11 66.77 exon Transition 0/1 Unannotated
Scaffold_3566 30098 C T 28 141.88 noncoding Transition 0/1 Unannotated
Scaffold_3566 44550 A G 250 607.77 noncoding Transition 0/1 Unannotated
Scaffold_3566 44580 T C 250 1168.77 noncoding Transition 0/1 Unannotated
Scaffold_3566 44631 A G 249 283.77 noncoding Transition 0/1 Unannotated
Scaffold_3566 44660 A G 243 40.77 noncoding Transition 0/1 Unannotated
Scaffold_3572 12050 C T 196 1090.77 intron Transition 0/1 Unannotated
Scaffold_3572 13115 C T 78 911.77 CDS Transition 0/1 Unannotated
Scaffold_3572 13376 C T 230 304.77 noncoding Transition 0/1 Unannotated
Scaffold_3572 13408 C T 218 4535.77 noncoding Transition 0/1 Unannotated
Scaffold_3572 13423 C T 158 2066.77 noncoding Transition 0/1 Unannotated
Scaffold_3572 13438 C T 166 459.77 noncoding Transition 0/1 Unannotated
Scaffold_3572 13596 C T 75 1343.77 noncoding Transition 0/1 Unannotated
Scaffold_3572 13733 C T 49 675.77 noncoding Transition 0/1 Unannotated
Scaffold_3572 13751 C T 44 269.77 noncoding Transition 0/1 Unannotated
Scaffold_3572 13813 C T 92 62.77 noncoding Transition 0/1 Unannotated
Scaffold_3572 13833 C T 84 1099.77 noncoding Transition 0/1 NADH-ubiquinone oxidoreductase chain 3 (EC 7.1.1.2) (NADH dehydrogenase sub... more
NADH-ubiquinone oxidoreductase chain 3 (EC 7.1.1.2) (NADH dehydrogenase subunit 3)
Scaffold_3572 13889 C T 88 428.77 noncoding Transition 0/1 NADH-ubiquinone oxidoreductase chain 3 (EC 7.1.1.2) (NADH dehydrogenase sub... more
NADH-ubiquinone oxidoreductase chain 3 (EC 7.1.1.2) (NADH dehydrogenase subunit 3)

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