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M-83 SNPs

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Total record count: 7933.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3788 45383 A G 250 617.77 noncoding Transition 0/1 Unannotated
Scaffold_3788 46680 G A 249 657.77 noncoding Transition 0/1 Unannotated
Scaffold_3788 46872 C T 27 102.77 noncoding Transition 0/1 Unannotated
Scaffold_3788 47064 G A 87 142.77 noncoding Transition 0/1 Unannotated
Scaffold_3788 47149 G A 55 373.77 noncoding Transition 0/1 Unannotated
Scaffold_3788 47683 G A 62 508.77 noncoding Transition 0/1 Unannotated
Scaffold_3788 47690 G A 63 111.77 noncoding Transition 0/1 Unannotated
Scaffold_3789 20867 A G 14 100.77 CDS Transition 0/1 Unannotated
Scaffold_3789 22506 G A 27 225.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3789 22595 G A 42 31.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3789 22600 G A 39 169.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3789 22604 G A 37 187.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3792 35050 C T 52 280.77 noncoding Transition 0/1 Unannotated
Scaffold_3794 1185 A G 32 777.79 exon Transition 1/1 Unannotated
Scaffold_3798 5901 C T 13 132.77 CDS Transition 0/1 12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate-10,11-re... more
12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 3) (OPDA-reductase 3) (LeOPR3)
Scaffold_3798 5902 A G 14 175.77 CDS Transition 0/1 12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate-10,11-re... more
12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 3) (OPDA-reductase 3) (LeOPR3)
Scaffold_3798 6068 C T 82 2356.77 CDS Transition 1/1 12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate-10,11-re... more
12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 3) (OPDA-reductase 3) (LeOPR3)
Scaffold_3800 53433 G A 55 217.77 noncoding Transition 0/1 Unannotated
Scaffold_3801 8038 A G 250 1012.77 noncoding Transition 0/1 Unannotated
Scaffold_3801 8042 A G 250 99.77 noncoding Transition 0/1 Unannotated

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