SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3962 28679 C T 33 164.77 exon Transition 0/1 Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
Scaffold_3962 29035 C T 11 35.77 exon Transition 0/1 Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
Scaffold_3962 29239 T C 38 716.77 exon Transition 0/1 Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
Scaffold_3962 29298 A G 46 300.77 exon Transition 0/1 Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
Scaffold_3969 44856 T C 19 178.77 exon Transition 0/1 Unannotated
Scaffold_3969 44975 T C 39 818.96 exon Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3969 45336 C T 12 39.77 exon Transition 0/1 Unannotated
Scaffold_3969 46165 T C 21 57.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more
Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
Scaffold_3971 25103 T C 109 284.77 noncoding Transition 0/1 Unannotated
Scaffold_3971 25104 T C 186 781.77 noncoding Transition 0/1 Unannotated
Scaffold_3971 25106 A G 250 1042.77 noncoding Transition 0/1 Unannotated
Scaffold_3971 25117 T C 250 59.77 noncoding Transition 0/1 Unannotated
Scaffold_3971 25118 T C 250 889.77 noncoding Transition 0/1 Unannotated
Scaffold_3971 25149 A G 250 433.77 noncoding Transition 0/1 Unannotated
Scaffold_3971 25194 A G 250 681.77 noncoding Transition 0/1 Unannotated
Scaffold_3971 25206 T C 249 1039.77 noncoding Transition 0/1 Unannotated
Scaffold_3971 25208 T C 250 2032.77 noncoding Transition 0/1 Unannotated
Scaffold_3971 25254 A G 250 320.77 noncoding Transition 0/1 Unannotated
Scaffold_3971 25549 G A 184 6359.77 noncoding Transition 1/1 Unannotated
Scaffold_3975 35860 T C 98 74.77 exon Transition 0/1 Phosphate transporter PHO1 homolog 3 (Protein PHO1 homolog 3) (AtPHO1;H3)