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  3. RGC-1066 SNPs

RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_523 49303 T C 250 2423.77 CDS Transition 0/1 Calnexin homolog
Scaffold_523 49378 A G 198 1148.77 CDS Transition 0/1 Calnexin homolog
Scaffold_523 49408 T C 131 1086.77 CDS Transition 0/1 Calnexin homolog
Scaffold_523 49414 A G 128 618.77 CDS Transition 0/1 Calnexin homolog
Scaffold_51 428397 G A 10 278.03 intron Transition 0/1 Calnexin homolog 2
Scaffold_2906 3829 A G 250 9015.77 exon Transition 1/1 Catalase (EC 1.11.1.6)
Scaffold_2906 3850 A G 250 8850.77 exon Transition 1/1 Catalase (EC 1.11.1.6)
Scaffold_2906 3997 T C 19 529.77 intron Transition 1/1 Catalase (EC 1.11.1.6)
Scaffold_2906 4039 A G 11 310.78 CDS Transition 1/1 Catalase (EC 1.11.1.6)
Scaffold_38 56584 C T 13 113.77 CDS Transition 0/1 CDPK-related kinase 1 (AtCRK1) (EC 2.7.11.1) (Calcium/calmodulin-dependent ... more
CDPK-related kinase 1 (AtCRK1) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 3) (Calmodulin-binding protein kinase 3) (AtCBK3) (CaM-binding protein kinase 3)
Scaffold_38 56607 C T 29 559.77 CDS Transition 0/1 CDPK-related kinase 1 (AtCRK1) (EC 2.7.11.1) (Calcium/calmodulin-dependent ... more
CDPK-related kinase 1 (AtCRK1) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 3) (Calmodulin-binding protein kinase 3) (AtCBK3) (CaM-binding protein kinase 3)
Scaffold_2570 61328 T C 30 632.77 CDS Transition 0/1 Cell division cycle 20.1, cofactor of APC complex (AtCDC20.1)
Scaffold_2570 61397 A G 145 547.77 CDS Transition 0/1 Cell division cycle 20.1, cofactor of APC complex (AtCDC20.1)
Scaffold_2570 61486 G A 96 713.77 CDS Transition 0/1 Cell division cycle 20.1, cofactor of APC complex (AtCDC20.1)
Scaffold_335 43256 T C 90 2537.77 noncoding Transition 0/1 Cellulose synthase A catalytic subunit 1 [UDP-forming] (AtCesA1) (EC 2.4.1.... more
Cellulose synthase A catalytic subunit 1 [UDP-forming] (AtCesA1) (EC 2.4.1.12) (Protein RADIALLY SWOLLEN 1) (AtRSW1)
Scaffold_335 43259 G A 90 2629.77 noncoding Transition 0/1 Cellulose synthase A catalytic subunit 1 [UDP-forming] (AtCesA1) (EC 2.4.1.... more
Cellulose synthase A catalytic subunit 1 [UDP-forming] (AtCesA1) (EC 2.4.1.12) (Protein RADIALLY SWOLLEN 1) (AtRSW1)
Scaffold_3301 36377 A G 18 579.77 exon Transition 1/1 Cellulose synthase-like protein B4 (AtCslB4) (EC 2.4.1.-)
Scaffold_3025 45725 A G 34 39.77 noncoding Transition 0/1 Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK)
Scaffold_3025 45736 T A,C 26 833.77 noncoding Transition 1/2 Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK)
Scaffold_3025 45741 G A 26 626.77 noncoding Transition 0/1 Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK)

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