RGC-1066 SNPs

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Total record count: 10279.

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	SNP Id	Position	Reference Allele	Alternate Allele	DP	Quality	Located At	Type	Genotype	Function
	Scaffold_3034	41270	G	A	28	773.77	CDS	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3034	41427	A	G	11	364.77	intron	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3034	42656	T	C	10	370.77	CDS	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3176	66345	G	A	13	357.78	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3253	41646	G	A	15	67.77	transcription_start_site	Transition	0/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3253	41724	G	A	31	82.77	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3253	41737	C	T	25	36.77	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3253	41780	C	T	19	143.77	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3253	41831	C	T	18	60.77	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3253	41922	C	T	34	166.77	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3253	41973	G	A	18	104.77	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3253	41997	G	A	13	103.77	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3517	17676	C	T	32	1223.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3517	17900	T	C	34	925.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3517	17956	C	T	23	793.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3517	17974	C	T	37	1281.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3517	18098	C	T	93	3030.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3517	18126	G	A	81	2559.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3517	18194	T	C	25	866.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3517	18338	G	A	94	2822.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
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