RGC-1066 SNPs

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Total record count: 10279.

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	SNP Id	Position	Reference Allele	Alternate Allele	DP	Quality	Located At	Type	Genotype	Function
	Scaffold_3517	18504	T	C	38	1102.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3517	18548	T	C	40	1074.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3517	18609	T	C	11	397.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3517	19956	G	A	18	175.9	noncoding	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3517	19958	C	T	18	178.9	noncoding	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3529	15464	C	T	36	54.77	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3529	15521	C	T	81	1885.77	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3529	15572	C	T	53	158.77	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3529	15600	G	A	25	139.77	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3529	15752	A	G	25	960.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3529	15935	C	T	14	347.77	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3529	16061	C	T	117	3021.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3529	16109	T	C	114	3447.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3529	16222	C	T	48	1266.77	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3529	16247	G	A	38	1257.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3529	16378	T	C	66	2231.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3529	16385	G	A	79	2673.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3529	16500	A	G	102	3556.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3568	13006	A	G	51	1773.77	CDS	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_3568	13150	G	A	53	1697.77	CDS	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
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