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RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_146 327033 G T 10 51.77 intron Transversion 0/1 Unannotated
Scaffold_146 327034 T A 10 61.77 intron Transversion 0/1 Unannotated
Scaffold_146 391194 A C 12 418.77 noncoding Transversion 1/1 Unannotated
Scaffold_146 391195 C A 12 379.77 noncoding Transversion 1/1 Unannotated
Scaffold_146 391464 A T 29 896.77 noncoding Transversion 1/1 Unannotated
Scaffold_146 391466 A C 15 382.77 noncoding Transversion 0/1 Unannotated
Scaffold_147 24687 A C 29 810.77 exon Transversion 1/1 Unannotated
Scaffold_147 25009 T G 19 604.77 exon Transversion 1/1 Unannotated
Scaffold_147 31951 A T 24 613.77 CDS Transversion 1/1 Unannotated
Scaffold_147 106715 A T 23 613.77 noncoding Transversion 1/1 Unannotated
Scaffold_148 143864 G T 36 1072.77 CDS Transversion 1/1 Unannotated
Scaffold_148 151359 G C 20 610.77 intron Transversion 1/1 Beta-glucosidase 44 (AtBGLU44) (EC 3.2.1.21)
Scaffold_148 166283 G T 21 36.77 exon Transversion 0/1 Unannotated
Scaffold_148 346858 C A 57 2274.77 noncoding Transversion 1/1 DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-enco... more
DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'') (RNA polymerase subunit beta'')
Scaffold_148 384972 T A 61 1807.77 CDS Transversion 1/1 Mechanosensitive ion channel protein 3, chloroplastic (Mechanosensitive cha... more
Mechanosensitive ion channel protein 3, chloroplastic (Mechanosensitive channel of small conductance-like 3) (MscS-Like protein 3)
Scaffold_148 450325 C A 16 473.77 exon Transversion 1/1 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 (pTAC10) (Plastid-encoded RNA p... more
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 (pTAC10) (Plastid-encoded RNA polymerase-associated protein 3) (PEP-associated protein 3) (Protein PIGMENT DEFECTIVE 312)
Scaffold_148 450416 C A 124 3963.77 exon Transversion 1/1 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 (pTAC10) (Plastid-encoded RNA p... more
Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 (pTAC10) (Plastid-encoded RNA polymerase-associated protein 3) (PEP-associated protein 3) (Protein PIGMENT DEFECTIVE 312)
Scaffold_149 392126 G T 11 103.77 intron Transversion 0/1 Unannotated
Scaffold_149 392133 T G 10 230.77 intron Transversion 0/1 Unannotated
Scaffold_150 104990 C G 69 1716.77 CDS Transversion 1/1 DExH-box ATP-dependent RNA helicase DExH12 (EC 3.6.4.13) (BRR2 homolog A) (... more
DExH-box ATP-dependent RNA helicase DExH12 (EC 3.6.4.13) (BRR2 homolog A) (AtBRR2A) (Pre-mRNA-splicing helicase BRR2A) (Protein EMBRYO DEFECTIVE 1507)

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