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RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_2811 9460 T G 46 799.77 CDS Transversion 0/1 Unannotated
Scaffold_2811 9628 A T 85 676.77 exon Transversion 0/1 Unannotated
Scaffold_2812 30936 G T 49 1906.77 noncoding Transversion 1/1 Unannotated
Scaffold_2812 58876 T A 25 552.53 exon Transversion 1/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_2812 58896 G T 20 430.77 exon Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_2812 59149 T A 23 537.77 exon Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_2812 77105 C G 43 1499.77 intron Transversion 1/1 50S ribosomal protein L2-B, chloroplastic
Scaffold_2815 3856 G T 248 143.03 noncoding Transversion 1/1 Unannotated
Scaffold_2815 5495 G T 60 1317.77 intron Transversion 0/1 Probable inactive dual specificity protein phosphatase-like At4g18593
Scaffold_2815 5523 T G 28 612.74 intron Transversion 1/1 Unannotated
Scaffold_2820 24005 A C 107 3937.77 exon Transversion 1/1 Unannotated
Scaffold_2828 2136 A T 10 303.78 noncoding Transversion 1/1 Unannotated
Scaffold_2831 18369 A C 18 43.77 CDS Transversion 0/1 Unannotated
Scaffold_2831 19953 C A 10 243.84 noncoding Transversion 0/1 Unannotated
Scaffold_2831 25120 C G 12 351.78 exon Transversion 1/1 Unannotated
Scaffold_2831 25860 T G 14 112.77 intron Transversion 0/1 Unannotated
Scaffold_2831 26149 G C 10 39.77 CDS Transversion 0/1 Unannotated
Scaffold_2835 47224 T A 14 467.77 noncoding Transversion 1/1 Unannotated
Scaffold_2839 17707 A C 11 243.77 noncoding Transversion 0/1 Unannotated
Scaffold_2840 7994 G T 51 1719.77 noncoding Transversion 1/1 Unannotated

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