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RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3789 22648 A T 23 111.77 CDS Transversion 0/1 Uncharacterized mitochondrial protein AtMg00240 (ORF111a)
Scaffold_3791 8607 A T 248 490.77 noncoding Transversion 0/1 Unannotated
Scaffold_3791 8618 A T 250 471.77 noncoding Transversion 0/1 Unannotated
Scaffold_3791 31664 C A 16 316.77 noncoding Transversion 0/1 Unannotated
Scaffold_3792 35053 T A 100 3521.77 noncoding Transversion 1/1 Unannotated
Scaffold_3794 201 G T 72 215.77 CDS Transversion 0/1 Reticulon-like protein B18 (AtRTNLB18)
Scaffold_3794 798 G C 11 277.9 intron Transversion 0/1 Unannotated
Scaffold_3794 1295 G T 26 459.77 exon Transversion 0/1 Unannotated
Scaffold_3794 30878 A C 250 263.77 noncoding Transversion 0/1 Unannotated
Scaffold_3794 30987 G T 40 1545.77 noncoding Transversion 1/1 Uncharacterized mitochondrial protein AtMg00860 (ORF158)
Scaffold_3797 27098 A C 32 309.77 noncoding Transversion 0/1 Unannotated
Scaffold_3798 6135 A C 18 325.77 CDS Transversion 0/1 12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate-10,11-re... more
12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 3) (OPDA-reductase 3) (LeOPR3)
Scaffold_3798 6181 A T 20 153.77 CDS Transversion 0/1 12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate-10,11-re... more
12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 3) (OPDA-reductase 3) (LeOPR3)
Scaffold_3798 6219 A T 15 223.77 CDS Transversion 0/1 12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate-10,11-re... more
12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 3) (OPDA-reductase 3) (LeOPR3)
Scaffold_3798 41235 A C 10 132.77 noncoding Transversion 0/1 Unannotated
Scaffold_3800 15806 A C 250 611.77 noncoding Transversion 0/1 ATP synthase subunit beta, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sec... more
ATP synthase subunit beta, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit beta) (F-ATPase subunit beta)
Scaffold_3800 15807 A T 250 786.77 noncoding Transversion 0/1 ATP synthase subunit beta, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sec... more
ATP synthase subunit beta, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit beta) (F-ATPase subunit beta)
Scaffold_3803 20618 G T 43 119.77 noncoding Transversion 0/1 Unannotated
Scaffold_3803 20645 G C 42 389.77 noncoding Transversion 0/1 Unannotated
Scaffold_3803 20686 T A 23 129.77 noncoding Transversion 0/1 Unannotated

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