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RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3776 5063 C A 30 708.77 noncoding Transversion 0/1 Unannotated
Scaffold_3781 40881 A C 40 1453.77 noncoding Transversion 1/1 Unannotated
Scaffold_3781 40882 G T 53 1916.77 noncoding Transversion 1/1 Unannotated
Scaffold_3786 29680 C A 21 84.77 exon Transversion 0/1 Unannotated
Scaffold_3787 43874 A C 250 491.77 noncoding Transversion 0/1 Unannotated
Scaffold_3787 43891 A C 250 274.77 noncoding Transversion 0/1 Unannotated
Scaffold_3787 44023 A C 250 1555.77 noncoding Transversion 0/1 Unannotated
Scaffold_3787 44024 G C 250 315.77 noncoding Transversion 0/1 Unannotated
Scaffold_3787 44036 A C 247 1003.77 noncoding Transversion 0/1 Unannotated
Scaffold_3787 44039 A C 248 613.77 noncoding Transversion 0/1 Unannotated
Scaffold_3787 44063 A C 250 108.77 noncoding Transversion 0/1 Unannotated
Scaffold_3788 45354 A C 144 4909.77 noncoding Transversion 1/1 Unannotated
Scaffold_3789 17026 C A 17 548.77 CDS Transversion 1/1 Unannotated
Scaffold_3789 22381 C A 12 63.77 intron Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3789 22437 A C 13 260.77 intron Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3789 22459 G T 22 49.77 CDS Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3789 22467 G C 28 64.77 CDS Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3789 22475 G T 37 56.77 CDS Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3789 22540 G T 77 41.77 CDS Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3789 22629 G T 41 173.77 CDS Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]

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