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  3. RGC-1066 SNPs

RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3969 45248 G T 63 1312.77 exon Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3969 45750 A C 29 39.77 exon Transversion 0/1 Unannotated
Scaffold_3969 45965 T G 37 115.77 exon Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more
Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
Scaffold_3969 46167 T G 79 1671.77 CDS Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more
Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
Scaffold_3971 25105 G C 250 393.77 noncoding Transversion 0/1 Unannotated
Scaffold_3971 25397 A C 250 2004.77 noncoding Transversion 0/1 Unannotated
Scaffold_3979 4127 T G 138 4672.77 noncoding Transversion 1/1 Unannotated
Scaffold_3980 41371 A C 36 700.77 exon Transversion 0/1 Unannotated
Scaffold_3980 41433 C G 59 730.77 exon Transversion 0/1 Unannotated
Scaffold_3980 51236 A T 11 311.78 noncoding Transversion 1/1 Unannotated
Scaffold_3987 20662 A C 250 6371.77 CDS Transversion 0/1 Unannotated
Scaffold_3987 20663 G T 250 8775.77 CDS Transversion 1/1 Unannotated
Scaffold_3987 20706 A C 250 1182.77 intron Transversion 0/1 Unannotated
Scaffold_3991 21612 A C 250 77.77 intron Transversion 0/1 Unannotated
Scaffold_3994 12860 T A 13 85.77 exon Transversion 0/1 Unannotated
Scaffold_3996 20350 G C 14 507.77 noncoding Transversion 1/1 Unannotated
Scaffold_3998 26458 T G 143 4651.77 noncoding Transversion 1/1 Unannotated
Scaffold_3998 26460 T G 36 122.77 noncoding Transversion 0/1 Unannotated
Scaffold_4003 17061 G C 29 791.77 noncoding Transversion 1/1 Unannotated
Scaffold_4004 15382 T G 36 137.77 noncoding Transversion 0/1 Unannotated

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