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RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3954 35901 G C 68 53.77 noncoding Transversion 0/1 Unannotated
Scaffold_3954 35980 T A 30 37.77 noncoding Transversion 0/1 Unannotated
Scaffold_3954 43494 T G 207 7500.77 noncoding Transversion 1/1 Unannotated
Scaffold_3954 65278 C G 12 242.77 exon Transversion 0/1 Unannotated
Scaffold_3954 65340 T A 18 479.89 exon Transversion 1/1 Unannotated
Scaffold_3957 14299 C A 20 534.77 CDS Transversion 0/1 Unannotated
Scaffold_3961 56305 T G 250 96.77 noncoding Transversion 0/1 Unannotated
Scaffold_3961 56317 G T 250 759.77 noncoding Transversion 0/1 Unannotated
Scaffold_3961 56332 C G 250 416.77 noncoding Transversion 0/1 Unannotated
Scaffold_3962 28263 T A 13 60.77 exon Transversion 0/1 Protein WHAT'S THIS FACTOR 1 homolog
Scaffold_3962 28510 T A 27 196.77 exon Transversion 0/1 Protein WHAT'S THIS FACTOR 1 homolog
Scaffold_3962 28750 A T 34 326.77 exon Transversion 0/1 Protein WHAT'S THIS FACTOR 1 homolog
Scaffold_3962 28758 A T 40 423.77 exon Transversion 0/1 Protein WHAT'S THIS FACTOR 1 homolog
Scaffold_3962 28816 T A 25 80.77 exon Transversion 0/1 Protein WHAT'S THIS FACTOR 1 homolog
Scaffold_3962 28978 C A 10 61.77 exon Transversion 0/1 Protein WHAT'S THIS FACTOR 1 homolog
Scaffold_3962 29254 G T 47 446.77 exon Transversion 0/1 Protein WHAT'S THIS FACTOR 1 homolog
Scaffold_3968 30255 C G 27 268.77 noncoding Transversion 0/1 Unannotated
Scaffold_3969 44864 T G 69 1661.77 exon Transversion 0/1 Unannotated
Scaffold_3969 45054 A T 11 58.77 exon Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3969 45158 A T 48 811.77 exon Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]

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