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RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3934 12861 G C 55 1192.77 exon Transversion 0/1 Unannotated
Scaffold_3934 41995 A C 15 526.77 intron Transversion 1/1 Unannotated
Scaffold_3937 3014 C A 21 447.77 CDS Transversion 0/1 NEDD8-conjugating enzyme Ubc12 (EC 2.3.2.-) (RUB1 carrier protein 1) (RUB1-... more
NEDD8-conjugating enzyme Ubc12 (EC 2.3.2.-) (RUB1 carrier protein 1) (RUB1-conjugating enzyme 1)
Scaffold_3937 3196 T A 39 1143.77 CDS Transversion 1/1 NEDD8-conjugating enzyme Ubc12 (EC 2.3.2.-) (RUB1 carrier protein 1) (RUB1-... more
NEDD8-conjugating enzyme Ubc12 (EC 2.3.2.-) (RUB1 carrier protein 1) (RUB1-conjugating enzyme 1)
Scaffold_3942 3813 C A 91 3350.77 noncoding Transversion 1/1 Unannotated
Scaffold_3942 3814 T A 90 3342.77 noncoding Transversion 1/1 Unannotated
Scaffold_3942 33271 C G 11 159.77 exon Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3942 33386 A C 23 403.77 CDS Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3942 33761 C A 39 462.77 CDS Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3942 35335 C G 69 2443.77 exon Transversion 1/1 Unannotated
Scaffold_3944 3525 A C 54 1600.77 intron Transversion 1/1 Unannotated
Scaffold_3948 6473 C G 49 420.77 exon Transversion 0/1 Protein transport protein SEC16A homolog (Protein MAIGO 5)
Scaffold_3948 6533 G T 20 71.77 exon Transversion 0/1 Protein transport protein SEC16A homolog (Protein MAIGO 5)
Scaffold_3948 6541 C A 18 131.77 exon Transversion 0/1 Protein transport protein SEC16A homolog (Protein MAIGO 5)
Scaffold_3948 25596 G T 31 916.77 noncoding Transversion 1/1 Unannotated
Scaffold_3950 1071 G T 31 52.74 noncoding Transversion 1/1 Unannotated
Scaffold_3951 2279 A C 13 120.77 exon Transversion 0/1 Unannotated
Scaffold_3951 2280 C A 18 259.77 exon Transversion 0/1 Unannotated
Scaffold_3951 2630 T G 52 1713.77 exon Transversion 1/1 Unannotated
Scaffold_3954 35783 T A 45 38.77 noncoding Transversion 0/1 Unannotated

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