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RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3172 18319 G T 12 123.77 noncoding Transversion 0/1 Adenylate kinase 2, chloroplastic (AK 2) (EC 2.7.4.3) (ATP-AMP transphospho... more
Adenylate kinase 2, chloroplastic (AK 2) (EC 2.7.4.3) (ATP-AMP transphosphorylase 2) (ATP:AMP phosphotransferase) (Adenylate monophosphate kinase 2) (AMK2)
Scaffold_3173 37155 C G 96 3466.77 noncoding Transversion 1/1 30S ribosomal protein S2, chloroplastic
Scaffold_3173 37156 T G 94 3333.77 noncoding Transversion 1/1 30S ribosomal protein S2, chloroplastic
Scaffold_3176 66833 C A 12 312.78 exon Transversion 1/1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more
Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Scaffold_3176 66926 C G 12 309.78 exon Transversion 1/1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more
Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Scaffold_3177 25794 A T 48 88.77 CDS Transversion 0/1 Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl ami... more
Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S) (Meiotic prophase aminopeptidase 1)
Scaffold_3179 5904 G T 15 544.77 noncoding Transversion 1/1 Unannotated
Scaffold_3180 7428 T G 113 1849.77 noncoding Transversion 0/1 Unannotated
Scaffold_3180 7429 G T 101 1055.77 noncoding Transversion 0/1 Unannotated
Scaffold_3180 32903 A C 250 50.77 noncoding Transversion 0/1 Unannotated
Scaffold_3180 32904 A T 250 32.77 noncoding Transversion 0/1 Unannotated
Scaffold_3180 33481 A T 27 862.77 noncoding Transversion 1/1 Unannotated
Scaffold_3180 33561 A T 249 200.77 noncoding Transversion 0/1 Unannotated
Scaffold_3180 33872 T G 102 129.77 noncoding Transversion 0/1 Unannotated
Scaffold_3181 40072 T A 22 615.77 noncoding Transversion 1/1 Unannotated
Scaffold_3181 40077 A T 22 645.77 noncoding Transversion 1/1 Unannotated
Scaffold_3184 42312 C G 23 621.77 noncoding Transversion 1/1 Unannotated
Scaffold_3185 241 T G 10 177.77 exon Transversion 0/1 Unannotated
Scaffold_3185 455 G T 14 223.77 exon Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more
Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
Scaffold_3185 577 T G 13 149.77 exon Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more
Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]

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