2. INDEls on Clusterbean
  3. Rgc-936 Snps

Rgc-936 Snps

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Total record count: 9714.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_112 176629 G A 89 779.77 CDS Transition 0/1 Unannotated
Scaffold_112 177929 C T 45 99.77 CDS Transition 0/1 Unannotated
Scaffold_112 177933 G A 47 109.77 CDS Transition 0/1 Unannotated
Scaffold_112 178102 C T 56 467.77 CDS Transition 0/1 Unannotated
Scaffold_112 211961 A G 19 31.77 CDS Transition 0/1 Protein ILITYHIA
Scaffold_112 268392 G A 91 1968.56 CDS Transition 0/1 Probable protein phosphatase 2C 6 (AtPP2C06) (EC 3.1.3.16)
Scaffold_112 269008 G A 14 72.77 intron Transition 0/1 Probable protein phosphatase 2C 18 (AtPP2C18) (EC 3.1.3.16)
Scaffold_112 406564 A G 11 55.77 intron Transition 0/1 Unannotated
Scaffold_113 15884 G A 10 221.28 intron Transition 0/1 Probable serine/threonine protein kinase IRE (EC 2.7.11.1) (Protein INCOMPL... more
Probable serine/threonine protein kinase IRE (EC 2.7.11.1) (Protein INCOMPLETE ROOT HAIR ELONGATION) (AtIRE)
Scaffold_113 268442 C T 81 169.77 CDS Transition 0/1 Unannotated
Scaffold_113 320811 G A 31 62.77 exon Transition 0/1 Unannotated
Scaffold_113 460774 A G 27 42.77 exon Transition 0/1 Unannotated
Scaffold_114 38928 A G 45 538.77 intron Transition 0/1 Unannotated
Scaffold_114 380082 T C 15 242.77 intron Transition 0/1 Isocitrate dehydrogenase [NADP] (IDH) (EC 1.1.1.42) (IDP) (NADP(+)-specific... more
Isocitrate dehydrogenase [NADP] (IDH) (EC 1.1.1.42) (IDP) (NADP(+)-specific ICDH) (Oxalosuccinate decarboxylase)
Scaffold_114 381461 T C 45 904.77 exon Transition 0/1 Isocitrate dehydrogenase [NADP] (IDH) (EC 1.1.1.42) (IDP) (NADP(+)-specific... more
Isocitrate dehydrogenase [NADP] (IDH) (EC 1.1.1.42) (IDP) (NADP(+)-specific ICDH) (Oxalosuccinate decarboxylase)
Scaffold_114 381463 G A 50 1185.77 exon Transition 0/1 Isocitrate dehydrogenase [NADP] (IDH) (EC 1.1.1.42) (IDP) (NADP(+)-specific... more
Isocitrate dehydrogenase [NADP] (IDH) (EC 1.1.1.42) (IDP) (NADP(+)-specific ICDH) (Oxalosuccinate decarboxylase)
Scaffold_114 381560 A G 20 179.77 exon Transition 0/1 Unannotated
Scaffold_114 401773 T C 50 176.77 CDS Transition 0/1 Unannotated
Scaffold_114 411195 C T 33 117.77 noncoding Transition 0/1 Unannotated
Scaffold_115 57489 A G 10 181.9 intron Transition 0/1 Unannotated

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