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M-83 SNPs

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Total record count: 7933.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_2811 9435 C T 22 202.77 CDS Transition 0/1 Unannotated
Scaffold_2811 9603 A G 73 1290.77 exon Transition 0/1 Unannotated
Scaffold_2812 59112 C T 25 658.79 exon Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_2815 5197 G A 99 2049.77 exon Transition 0/1 Probable inactive dual specificity protein phosphatase-like At4g18593
Scaffold_2815 5389 C T 24 544.77 CDS Transition 0/1 Probable inactive dual specificity protein phosphatase-like At4g18593
Scaffold_2831 9469 G A 116 3874.77 noncoding Transition 1/1 Unannotated
Scaffold_2839 7192 A G 39 70.78 exon Transition 0/1 Unannotated
Scaffold_2839 17707 A C,T 14 1068.77 noncoding Transition 1/2 Unannotated
Scaffold_2839 17708 G A 67 1138.77 noncoding Transition 0/1 Unannotated
Scaffold_2839 22134 G A 51 110.79 noncoding Transition 0/1 Unannotated
Scaffold_2840 10724 T C 11 36.77 CDS Transition 0/1 Acetolactate synthase small subunit 1, chloroplastic (Acetohydroxy-acid syn... more
Acetolactate synthase small subunit 1, chloroplastic (Acetohydroxy-acid synthase small subunit) (AHAS) (ALS) (Protein valine-tolerant 1)
Scaffold_2841 101 C T 133 4890.77 intron Transition 1/1 Unannotated
Scaffold_2849 6856 G A 13 203.77 CDS Transition 0/1 Unannotated
Scaffold_2849 6898 A G 29 295.77 CDS Transition 0/1 Unannotated
Scaffold_2849 6943 A G 46 673.77 CDS Transition 0/1 Unannotated
Scaffold_2849 6975 G A 33 546.77 CDS Transition 0/1 Unannotated
Scaffold_2849 47774 A G 12 249.84 CDS Transition 0/1 Unannotated
Scaffold_2849 47800 A G 12 250.88 CDS Transition 0/1 Unannotated
Scaffold_2852 4408 T C 24 635.79 exon Transition 0/1 Amino acid permease 3 (Amino acid transporter AAP3)
Scaffold_2852 4510 C T 25 705.94 exon Transition 0/1 Amino acid permease 3 (Amino acid transporter AAP3)

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