SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3824 10845 T G 250 71.77 exon Transversion 0/1 Unannotated
Scaffold_3824 17309 G C 144 49.74 noncoding Transversion 1/1 Unannotated
Scaffold_3832 26526 G T 214 3230.05 noncoding Transversion 0/1 Unannotated
Scaffold_3832 26530 G T 104 3712.77 noncoding Transversion 1/1 Unannotated
Scaffold_3835 1822 A T 18 274.77 CDS Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3841 45858 G C 24 851.77 noncoding Transversion 1/1 Unannotated
Scaffold_3845 1546 G C 62 1558.78 exon Transversion 1/1 Stem-specific protein TSJT1
Scaffold_3846 19631 T G 11 32.77 exon Transversion 0/1 Unannotated
Scaffold_3848 6856 T G 48 1377.77 noncoding Transversion 1/1 Unannotated
Scaffold_3850 19376 T A 29 275.77 exon Transversion 0/1 Unannotated
Scaffold_3853 13205 C G 139 4896.77 noncoding Transversion 1/1 Unannotated
Scaffold_3853 13206 T G 135 4617.77 noncoding Transversion 1/1 Unannotated
Scaffold_3854 39614 A T 249 176.77 intron Transversion 0/1 Unannotated
Scaffold_3854 40364 A T 249 162.77 CDS Transversion 0/1 Unannotated
Scaffold_3855 30179 T A 38 1365.77 intron Transversion 1/1 Unannotated
Scaffold_3856 80466 A T 250 172.77 CDS Transversion 0/1 Unannotated
Scaffold_3856 80885 A C 250 1107.77 noncoding Transversion 0/1 Unannotated
Scaffold_3856 80886 A T 250 845.77 noncoding Transversion 0/1 Unannotated
Scaffold_3858 104 T A 78 204.77 noncoding Transversion 0/1 Unannotated
Scaffold_3859 40163 A C 36 1238.77 noncoding Transversion 1/1 Unannotated