2. INDEls on Clusterbean
  3. Rgc-936 Snps

Rgc-936 Snps

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Total record count: 9714.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3585 46886 A C 250 2870.77 exon Transversion 0/1 Unannotated
Scaffold_3585 46917 C G 250 1052.77 exon Transversion 0/1 Unannotated
Scaffold_3585 46945 T G 249 231.77 exon Transversion 0/1 Unannotated
Scaffold_3585 47027 A T 206 823.77 exon Transversion 0/1 Unannotated
Scaffold_3585 47080 T G 102 198.77 exon Transversion 0/1 Unannotated
Scaffold_3589 17084 C A 21 438.77 CDS Transversion 0/1 Unannotated
Scaffold_3589 17275 G T 37 454.77 intron Transversion 0/1 Unannotated
Scaffold_3589 17378 C G 32 489.77 intron Transversion 0/1 Unannotated
Scaffold_3589 31330 A T 19 495.88 intron Transversion 0/1 Unannotated
Scaffold_3593 65431 C G 13 197.77 exon Transversion 0/1 Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1 (EC ... more
Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1 (EC 2.3.1.-)
Scaffold_3598 46944 C A 14 105.77 intron Transversion 0/1 Unannotated
Scaffold_3598 46945 T G 14 130.77 intron Transversion 0/1 Unannotated
Scaffold_3602 41813 G T 10 227.22 intron Transversion 0/1 Unannotated
Scaffold_3603 15988 A C 150 2568.77 noncoding Transversion 0/1 Unannotated
Scaffold_3620 16500 G C 12 36.77 intron Transversion 0/1 Unannotated
Scaffold_3622 5225 C A 12 88.77 CDS Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3624 40049 A T 138 37.82 CDS Transversion 0/1 Unannotated
Scaffold_3624 53465 T G 13 158.77 CDS Transversion 0/1 Unannotated
Scaffold_3627 32561 A C 16 113.77 noncoding Transversion 0/1 Unannotated
Scaffold_3635 18012 A T 30 132.77 CDS Transversion 0/1 CLIP-associated protein (AtCLASP)

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