2. INDEls on Clusterbean
  3. Rgc-936 Snps

Rgc-936 Snps

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Total record count: 9714.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3589 16287 A G 22 141.77 exon Transition 0/1 Unannotated
Scaffold_3589 17119 A G 31 73.77 CDS Transition 0/1 Unannotated
Scaffold_3589 17453 A G 13 112.77 intron Transition 0/1 Unannotated
Scaffold_3593 65553 C T 15 205.77 exon Transition 0/1 Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1 (EC ... more
Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1 (EC 2.3.1.-)
Scaffold_3600 12609 T C 28 41.77 noncoding Transition 0/1 Unannotated
Scaffold_3600 25006 G A 15 282.77 noncoding Transition 0/1 Unannotated
Scaffold_3600 25014 C T 17 64.77 noncoding Transition 0/1 Unannotated
Scaffold_3600 25051 T C 19 467.74 noncoding Transition 0/1 Unannotated
Scaffold_3601 16190 A G 69 320.77 exon Transition 0/1 F-box/WD-40 repeat-containing protein At5g21040
Scaffold_3604 15481 G A 17 308.77 exon Transition 0/1 Unannotated
Scaffold_3604 15506 G A 14 223.77 exon Transition 0/1 Unannotated
Scaffold_3612 53776 A G 14 36.77 noncoding Transition 0/1 Unannotated
Scaffold_3622 5267 C T 14 136.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3622 5268 G A 13 130.77 CDS Transition 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3633 35428 T C 11 247.77 noncoding Transition 0/1 Unannotated
Scaffold_3633 35429 T C 11 245.77 noncoding Transition 0/1 Unannotated
Scaffold_3635 18085 G A 13 38.77 CDS Transition 0/1 CLIP-associated protein (AtCLASP)
Scaffold_3637 6061 C T 22 552.77 noncoding Transition 0/1 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic (EC 1.6.5.-) (NAD(P... more
NAD(P)H-quinone oxidoreductase subunit H, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) (NADH-plastoquinone oxidoreductase subunit H)
Scaffold_3639 157 C T 19 277.77 noncoding Transition 0/1 NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic (EC 1.6.5.-) (NAD... more
NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, subunit 2 A) (NADH-plastoquinone oxidoreductase subunit 2 A)
Scaffold_3639 166 C T 16 195.77 noncoding Transition 0/1 NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic (EC 1.6.5.-) (NAD... more
NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, subunit 2 A) (NADH-plastoquinone oxidoreductase subunit 2 A)

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