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  3. RGC-1066 SNPs

RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3612 41712 T G 24 681.77 CDS Transversion 1/1 Unannotated
Scaffold_3612 41896 A T 16 351.77 CDS Transversion 0/1 Unannotated
Scaffold_3612 42100 A C 18 169.77 CDS Transversion 0/1 Unannotated
Scaffold_3617 7541 G C 250 181.77 noncoding Transversion 0/1 Unannotated
Scaffold_3620 14754 T G 229 81.77 noncoding Transversion 0/1 NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (EC 1.6.5.-) (NAD... more
NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (EC 1.6.5.-) (NAD(P)H dehydrogenase, subunit 2 B) (NADH-plastoquinone oxidoreductase subunit 2 B)
Scaffold_3622 4681 T G 20 46.77 exon Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3622 5300 C G 29 195.77 CDS Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_3625 26127 T G 10 322.78 noncoding Transversion 1/1 Unannotated
Scaffold_3626 59491 A T 10 151.77 exon Transversion 0/1 Unannotated
Scaffold_3632 133 T G 59 2214.77 intron Transversion 1/1 Unannotated
Scaffold_3633 35345 C A 11 333.78 noncoding Transversion 1/1 Unannotated
Scaffold_3633 35438 A C 15 49.77 noncoding Transversion 0/1 Unannotated
Scaffold_3634 25091 G T 50 745.77 noncoding Transversion 0/1 Unannotated
Scaffold_3635 17916 C A 54 1498.77 CDS Transversion 1/1 CLIP-associated protein (AtCLASP)
Scaffold_3641 30929 G T 49 1876.77 noncoding Transversion 1/1 Unannotated
Scaffold_3642 20073 A C 13 101.77 CDS Transversion 0/1 Protein Ycf2
Scaffold_3642 20222 T G 86 2966.77 exon Transversion 1/1 Protein Ycf2
Scaffold_3650 49299 C A 196 1449.77 noncoding Transversion 0/1 Unannotated
Scaffold_3651 3400 A C 34 932.77 noncoding Transversion 0/1 Unannotated
Scaffold_3651 3446 G T 59 1114.77 noncoding Transversion 0/1 Unannotated

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